• Introduction
  • Research Activities
  • Research Publications
  • Faculty

Introduction

Department of human Genetics was established on June 12, 2007, to study the genetic diversity and ecology of human population and rare genetic diseases in various ethnic and isonym groups. The programme was started to produce competent manpower in the subject of Medical Genetics as medical teachers, researchers and genetic counselors.
The training in the Human Disease Genetics aims to provide candidates with the requisite expertise in the concepts, approaches, and molecular biology techniques of basic and clinical genetic research. The programme provides students with a solid foundation through coursework, rigorous training in research and opportunities to develop communication and presentation skills. Basic understanding of the subject facilitates the development of independent investigators and teachers in the subject. The Department offers MPhil and PhD degree programs.

Objectives
  1. Establishment of a centre that will provide the detailed information about the field of study both at basic and clinical level with continuous curriculum update.
  2. To provide facilities for advanced studies and research leading to M.Phil/Ph.D. in the areas of human genetics that includes molecular biology, cytogenetic, population medical and clinical genetics.
  3. To study the genetic diversity and ecology of human population, particularly of common and rare genetic diseases in Pakistan.
  4. To develop trained manpower able to make diagnosis based upon the basic knowledge of disease genetics.
  5. To develop skilled human resources for genetic counseling regarding genetic disorders caused due to consanguinity in our population.
Working Facilities

Books and computing facilities

The department has a pretty good collection of books and user manuals in the field of human genetics and molecular biology. To upgrade their knowledge the students are encouraged to consult latest research papers. Facility of online journals is accessible to them not only in the main library but in the department as well. To increase the understanding of biological processes the biological data must be combined to form a comprehensive picture of these activities. For this purpose online freely available bioinformatics sites for databases and data analysis soft wares need to be used. Computers having full access to these sites are available in the department to facilitate the students.

Laboratory facilities and techniques

Following Laboratory facilities and techniques are available to identify the genetic determinants of complex disease traits by carrying out well-powered linkage and association studies in Pakistani population to detect novel disease loci. Further to Identify genes and variants contributing to various genetic disorders common in our population and to detect rare structural changes in chromosomes to identify the causes of certain inherited disorders in the pediatric population.

Sample collection (Human & Animal), Karyotyping, DNA/RNA extraction, Electrophoresis (agarose and PGAE), Cloning, hybridization, Southern/ Northern/Western blotting, Polymerase Chain Reaction (PCR) of all types i.e. Conventional, RT PCR & ARMS PCR, Restriction digestion & RFLP, cDNA synthesis, SSCP analysis, DNA mobility shift assay, Expression analysis, DNA sequencing, Primer designing, Pedigree construction and trait analysis, homozygosity mapping, haplotype analysis.

Employing these techniques all research projects are designed under following four main domains

  1. "Genetics of rare/common single gene disorders"
  2. "Genetic association studies of multifactorial diseases"
  3. "Genetic basis of resistance/susceptibility to diseases"
  4. "Pathways involved in iron induced oxidative stress in different metabolic diseases"

Future Plans
  • To improve the number of M. Phil. And PhD scholars in the department.
  • To upgrade the department by providing state of the art lab facilities for advance research and practical training in Molecular Genetics including cancer.
  • To establish a laboratory to provide rapid genetic testing in different hereditary diseases.

Research Activities

Research Projects (Completed & Ongoing)
Projects in Progress:
  • "Analysis Of Inhibin Alpha (769G>A) Gene Mutations In Patients With Premature Ovarian Failure"
  • "Sequence Analysis of Bone Morphogenetic Protein 15 (BMP15) Gene In Patients of Premature Ovarian Failure (POF)"
  • "DC-SIGN, -336A/G Genotyping of Patients with Dengue Fever and Dengue Hemorrhagic Fever"
  • "Genetic basis of cataract through linkage analysis in families from Balochistan"
  • "Transcriptional and Translational Regulation of Hepatic Glutaredoxin-5 Gene during LPS-Induced Acute Phase Reaction"
  • "A possible role of IL-6 in regulating hepatic ferrochelatase gene expression during LPS induced acute phase reaction in rats"
  • "Analysis of Genetic Factors Contributing to Urolithiasis in the Pakistani Population"
  • "Analysis of TCRC? promoter polymorphism (-560 C/T) in IgA nephropathy patients"
  • "Role of rs1934179 polymorphism (G/A) of DGKK gene in patients with hypospadias"
  • "Identification of disease causing gene through linkage analysis of families with congenital nephrotic syndrome"
  • "Molecular Genetics Studies in Pakistani Families with autosomal recessive primary microcephaly"
  • "Molecular Genetics of Pakistani families with Schizophrenia"
  • "Association of ACE (I/D) gene polymorphism in vitiligo and endometeriosis"

Research Publications

  • Shahzad M, Sivakumaran TA, Qaiser TA, Schultz JM, Hussain Z, Flanagan M, Bhinder MA, Kissell D, Greinwald JH Jr, Khan SN, Friedman TB, Zhang K,Riazuddin S, Riazuddin S, Ahmed ZM (2013). Genetic Analysis through OtoSeq of Pakistani Families Segregating Prelingual Hearing Loss. Otolaryngol Head Neck Surg. 149(3):478-87.

  • Raza A, Firasat S, Khaliq S, Abid A, Shah SS, Mehdi SQ, Mohyuddin A. (2013) HLA class I and II polymorphisms in the Gujjar population from Pakistan. Immunol Invest. 42(8):691-700.

  • Ahmad, G., Ramadori, P., Martius, G., Sial, G.Z. and Ramadori, G., Transcriptional and translational regulation of HO-1 in the liver and muscle of TO- & LPS-treated IL-6 knockout mice., Antioxidants & Redox Signaling., Article in review.

  • Fatima S, Usman Z, Ali A, Mehmood S, Khaliq S. (2013) Analysis Of Inhibin Alpha (769g>A) Gene Mutations in Patients with Premature Ovarian Failure; Int. Conf. App. Mol. Biol. Med. pp98.

  • Usman Z, Fatima S, Ali A, Mehmood S, Khaliq S. (2013) Sequence analysis of Bone Morphogenetic Protein 15 (BMP15) Gene in patients of Premature Ovarian Failure. Int. Conf. App. Mol. Biol. Med. pp141.

  • Ejaz H, Ul-Haq I, Mahmood S, Zafar A, Mohsin Javed M.(2013) Detection of extended-spectrum ?-lactamases in Klebsiella pneumoniae: comparison of phenotypic characterization methods. Pak J Med Sci. 29(3):768-72.

  • Firasat S, Raza A, Abid A, Aziz T, Mubarak M, Naqvi SA, Rizvi SA, Mehdi SQ, Khaliq S. The effect of chemokine receptor gene polymorphisms (CCR2V64I, CCR5-59029G>A and CR5?32) on renal allograft survival in Pakistani transplant patients. Gene. 11(2):314-319 (2012).

  • Prasov L, Masud T, Khaliq S, Mehdi SQ, Abid A, Oliver ER, Silva ED, Lewanda A, Brodsky MC, Borchert M, Kelberman D, Sowden JC, Dattani MT, Glaser T. ATOH7 mutations cause autosomal recessive persistent hyperplasia of the primary vitreous. Hum Mol Genet. 21(16)3681-3694 (2012).

  • Abid A, Khaliq S, Shahid S, Lanewala A, Mubarak M, Hashmi S, Kazi J, Masood T, Hafeez F, Naqvi SA, Rizvi SA, Mehdi SQ. A spectrum of novel NPHS1 and NPHS2 gene mutations in pediatric nephrotic syndrome patients from Pakistan. Gene. 2012 Jul 10;502(2):133-7. Epub 2012 Apr 28.

  • Ajaz S, Khaliq S, Hashmi A, Rizvi SAH, Mehdi SQ. Polymorphisms in the Methylene Tetrahydrofolate Reductase Gene and their Unique Combinations are Associated with an Increased Susceptibility to the Renal Cell Carcinomas. Genet Test Mol Biomarkers. May;16(5):346-352 (2012).

  • Shahid S, Abid A, Mehdi SQ, Firasat S, Lanewala A, Naqvi SAA, Rizvi SAH, Khaliq S. Association of the ACE - II genotype with the risk of nephrotic syndrome in Pakistani children, Gene. 493:165-168 (2012).

  • Hajan S.S, Abid A, Shahid S, Khaliq S. Identification of LIPH gene mutation in a consanguineous family segregating the woolly hair/hypotrichosis phenotype. J Pak Med Assoc. 61( 11) :1060-1064 (2011).

  • Ajaz S, Khaliq S, Abid A, Hassan AS, Hashmi A, Sultan G, Mohsin R, Mubarrak M, Naqvi SA, Rizvi SA, Mehdi SQ. Association of a Single-Nucleotide Polymorphism in the Promoter Region of the VEGF Gene with the Risk of Renal Cell Carcinoma. Genet Test Mol Biomarkers. 15(9): 653-657(2011).

  • Abid A, Akhtar N, Khaliq S, Mehdi SQ. Genetic heterogeneity for autosomal dominant familial hypertrophic cardiomyopathy in a Pakistani family. J Coll Physicians Surg. Pak. Apr;21(4):202-206. (2011).

Faculty


Dr. Shagufta Khaliq
  • Associate Professor and Head of the Department
  • Pride of Performance
  • M.Sc., Ph.D
  • Ph: +9242-111 333 366 Ext: 320

Dr. Saqib Mehmood
  • Assistant Professor
  • MBBS, M.Sc. Ph. D.

Dr. Munir Ahmad
  • Assistant Professor
  • M.Phil. Ph.D.

Dr. Ghayyor Ahmad
  • Assistant Professor
  • M.Sc., Ph. D.